Limestone cliffs around a clear turquoise lagoon in El Nido's Bacuit Bay on a sunny day

Lagoons to Panglao

Two weeks from Manila through El Nido, Coron and Cebu to Panglao.

Trip length
14 days / 13 nights
Nights by area
1 Manila, 7 Palawan, 1 Cebu, 4 Panglao
Between bases
Two flights, two ferries
Fly home from
Bohol–Panglao
Finding rooms in El Nido

Two Palawan bases and four nights on Panglao

Choose this itinerary when both El Nido and Coron matter to you, and you also want to see Bohol’s inland landscape. The Palawan days focus on different stretches of water: a kayak through Big Lagoon, beaches around Bacuit Bay, Kayangan Lake and the sandbars farther south. Panglao brings a change of pace, with a countryside drive, one reef trip and a final day on foot beside Alona Beach.

The order follows the transport links. Manila is an arrival night before the road journey to Clark and flight into Lio. You then cross from El Nido to Coron by ferry and fly out through Busuanga. A Cebu City overnight makes the next ferry a separate morning journey. It also gives you a taste of lechon and, with an early enough arrival, the old city around the Santo Niño basilica. There is no dash across Cebu to catch the last boat after a delayed flight.

Four El Nido nights provide three full days; three Coron nights provide two. Protect those stretches if Palawan is your main reason for coming. A shorter stay would force a choice between the lagoon and outer-beach routes, or between Coron’s lakes and Malcapuya. The four Panglao nights then leave one full day for the countryside, one for the reef and one with no scheduled departure.

December to May is generally the drier choice for the Palawan boat days. Rough seas can interrupt boats, especially during the wetter months; the June-to-November rainy season also overlaps typhoon risk. Keep a night between the domestic flight out of Bohol and a separately ticketed international departure. That onward night falls outside these fourteen days.

Big Lagoon by kayak

Paddle through the narrow entrance into Miniloc’s enclosed lagoon; the kayak charge is shared by two people.

Nacpan between boat days

A land-based outing north of El Nido breaks up the two Bacuit Bay tours with a long stretch of sand.

Kayangan and Twin Lagoon

Coron’s lake sits beyond a ridge reached by steps; Twin Lagoon adds a different swim on the same circuit.

Malcapuya and Ditaytayan

The outer-island day gives more time to beaches and a sandbar, with longer boat crossings than the lake tour.

Bohol’s inland contrast

See the hills at Carmen and tarsiers in Corella’s forest on one drive from Panglao.

A small boat to Balicasag

Share a private Panglao departure, then join a local guide in the reef areas around the island.

Best for

  • A first visit that puts El Nido and Coron ahead of a long city stay
  • Couples or friends sharing cars and a private Balicasag boat

StartBooker answer

What is the best two-week itinerary for a first trip to the Philippines?

For a first two-week trip, spend one night in Manila, four in El Nido, three in Coron, one in Cebu City and four on Panglao. That gives you two El Nido tours, Coron’s lakes and outer islands, Bohol’s countryside and Balicasag’s reef. Fly into El Nido through Clark and leave Palawan from Busuanga. The Cebu overnight separates the flight from the next day’s Bohol ferry, so an afternoon arrival fits the thirteen-night plan.

Overnight bases
Five bases across thirteen nights
Arrival flight
Clark to El Nido; about 1.5 hours
Final base
Four nights on Panglao, with departure from Bohol–Panglao airport

Things to do in Manila (Makati), El Nido, Coron, Cebu City, Bohol (Panglao), Philippines

Explore tours, attractions and local experiences in Manila (Makati), El Nido, Coron, Cebu City, Bohol (Panglao) along this route through Philippines.

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Five overnight bases

Town hotels for Palawan’s departures, one downtown Cebu night, then the same Panglao room for the last four nights.

5 stops · swipe

  1. Glass towers of the Makati skyline under a deep blue sky in Metro Manila 1

    Manila (Makati)

    1 night

    Makati’s restaurants and shopping streets

    Stay in Makati for an arrival evening with food within walking distance. A hotel around Greenbelt is useful for restaurants and the next morning’s booked van pickup. You will leave for Clark without returning to a NAIA bus stop.

    Read the Manila (Makati) guide →
  2. A sunlit limestone island rising from blue water in Bacuit Bay, El Nido 2

    El Nido

    4 nights

    Bacuit Bay’s limestone cliffs, lagoons and island beaches

    A room in El Nido town keeps tour meeting points and the ferry port close. Corong-Corong offers beachfront evenings but involves a ride into town for some departures. Choose between walking convenience and a quieter waterfront.

    Read the El Nido guide →
  3. Swimmers in clear turquoise water below limestone cliffs on Coron Island 3

    Coron

    3 nights

    Kayangan Lake, Twin Lagoon and Second World War wrecks

    Use Coron town for these three nights of boat tours. Both group tours collect from town hotels, and you can eat around the poblacion after returning. A hillside room may add a climb at the end of each day.

    Read the Coron guide →
  4. The red-tiled pavilion over Magellan's Cross in downtown Cebu City on a sunny day 4

    Cebu City

    1 night

    The Santo Niño basilica, Magellan’s Cross and roast-pork lechon

    Stay downtown for a short ride to Pier 1 the next morning. The streets around the basilica put Cebu’s historic centre nearby; a Mactan resort would send you back across the bridges for the ferry.

    Read the Cebu City guide →
  5. Palm trees, white sand and outrigger boats beside Alona Beach on Panglao, Bohol 5

    Bohol (Panglao)

    4 nights

    Alona’s shore, Balicasag’s reef and a day into Bohol’s interior

    Base yourself near Alona Beach for restaurants, boat-trip departures and a final day without a driver. Bohol’s hills and Corella are inland, but one countryside outing covers them without moving to Tagbilaran.

    Read the Bohol (Panglao) guide →

Fourteen days from the capital to Panglao

Arrival and departure count as days 1 and 14. The flight into Cebu is on day 9; the Bohol ferry follows on day 10.

1 Day 1 Land in Manila and stay in Makati

Complete eTravel at etravel.gov.ph within 72 hours before arrival; registration is free, and you need the QR code before boarding. After immigration at NAIA, book a Grab to your Makati hotel. Enter the hotel address for the arrival fare, follow the app’s pickup instructions and allow 30–90 minutes in traffic. Around Greenbelt, you can find a bowl of mami noodles or chicken adobo without another taxi. Your booked Clark van collects at the hotel tomorrow, so give the driver the Makati address and a pickup time suited to the flight.

  • Free eTravel registration
  • NAIA to Makati
  • Restaurants around Greenbelt

Base: Manila (Makati)

2 Day 2 Drive to Clark and fly to Lio

Use a booked Arrive Pampanga van from your Makati hotel to Clark, roughly ₱6,500 per vehicle including tolls. The road journey takes about 2–3 hours; add three hours at the airport before your Cebgo departure. Cebgo’s direct flight to El Nido takes around 1.5 hours, with one-way fares roughly ₱4,500–9,000 depending on the date and ticket. Book through Cebu Pacific. From Lio airport, a tricycle into town is about ₱300 per vehicle and 15–20 minutes. After checking in, walk to El Nido’s waterfront for grilled fish and a first look across Bacuit Bay.

  • Hotel pickup for Clark
  • Cebgo to El Nido
  • First look at Bacuit Bay

Base: El Nido

3 Day 3 Kayak into Big Lagoon on Tour A

Make Tour A your first island outing. El Nido Paradise charges about ₱1,500 per person for roughly 6–7 hours, with a bento lunch, water, mask and snorkel included. The main extra payments are ₱400 for the environmental fee, ₱200 for Big Lagoon entry and about ₱350 for a kayak seating two. Keep the environmental receipt for Tour C on day 5. At the lagoon, the kayak lets you move beyond the entrance into quieter water between tall limestone walls. Choose a life jacket that fits before paddling; the boat and beach stops also involve getting in and out of the water.

  • Big Lagoon kayak
  • Limestone-walled water
  • Lunch included

Base: El Nido

4 Day 4 Nacpan on a day away from the boats

Head north to Nacpan with HTT’s return shuttle, about ₱700 per person through hhospitality.tours. Allow 45–60 minutes each way and choose a return time that leaves several hours at the beach. Unlike the small island landings on the boat tours, Nacpan gives you room for a long walk along the sand. Leave time for a grilled-fish lunch at a beach restaurant and a shaded break before the ride back. The shuttle price is per seat: two travellers should allow roughly ₱1,400 for the return rides, with beach meals paid separately.

  • Nacpan’s long shoreline
  • Return shuttle from El Nido
  • A beach-restaurant lunch

Base: El Nido

5 Day 5 Tour C’s outer-island beaches

Tour C turns towards Helicopter Island, Hidden Beach and the coast around Matinloc, giving you a different route through Bacuit Bay. Book El Nido Paradise’s shared outing for about ₱1,700 per person and 6–7 hours. Lunch, water, mask and snorkel are included; hotel pickup is not, so go to the town meeting point. Bring the environmental-fee receipt from day 3. An optional Matinloc Shrine landing costs around ₱200 extra. The beach stops are the reason to choose this tour, and you can skip that paid visit while the group follows the boat itinerary. Use a dry pouch for valuables when going ashore.

  • Helicopter Island
  • Hidden Beach
  • Matinloc coast

Base: El Nido

6 Day 6 Cross to Coron on the midday ferry

Atienza’s El Nido–Coron sailing leaves at 12:30 and reaches Coron around 16:30, with a posted fare of ₱2,600 per person. Buy the ticket at atienzainterislandferriesinc.com and arrive at the port by 10:30 for the required two-hour check-in. The crossing takes about four hours in an air-conditioned cabin, so keep a light layer accessible. On arrival, allow roughly ₱300 for a private tricycle into Coron town, a ride of around five minutes. A town hotel puts you within the pickup area for the next two boat tours. Eat around the poblacion once you have arrived.

  • 10:30 port check-in
  • Four-hour crossing
  • Coron town arrival

Base: Coron

7 Day 7 Kayangan Lake and Twin Lagoon

El Nido Paradise’s Coron Super Ultimate tour costs about ₱2,200 per person and collects from town hotels around 7:30–8:00. It is an 8–9-hour outing with a guide, lunch and attraction entries included. Coron’s separate environmental fee is ₱200, valid for ten days; retain that receipt for tomorrow. At Kayangan, steps lead over a ridge to the lake, so footwear with grip is more useful than bare feet. At Twin Lagoon, the boat stops below more limestone walls for a swim between the sheltered basins. Snorkelling equipment can cost extra on this tour, even though lunch and the named site entries are covered by the fare.

  • Kayangan Lake
  • Twin Lagoon
  • Town-hotel pickup

Base: Coron

8 Day 8 Malcapuya, Bulog Dos and Ditaytayan

Take the Island Escapade tour for a day of sand and surface snorkelling after yesterday’s lake circuit. El Nido Paradise lists it at about ₱2,000 per person, including town pickup, lunch, water and site entries. Expect roughly eight hours out, with longer boat rides to these outer islands. Malcapuya has the broad beach; Bulog Dos and Ditaytayan add smaller island landings and a sandbar. Your Coron environmental-fee receipt already covers this second tour day. Use the beach stops for swimming and snorkelling close to shore, following the crew’s landing instructions. Book a shared airport van for day 9 through Psalms Travel or your hotel.

  • Malcapuya’s white sand
  • Bulog Dos island
  • Ditaytayan sandbar

Base: Coron

9 Day 9 Fly out of Palawan and sleep in Cebu

Leave Coron town in a shared van to Busuanga airport, from about ₱300 per person; allow 40–60 minutes on the road. Sunlight Air’s direct Cebu flight takes around 1.5–2 hours. Its lower fares are roughly ₱4,600 with carry-on only or ₱5,400 with 10 kg checked baggage, including taxes. An afternoon departure fits this route because you are staying in Cebu tonight. Enter your downtown hotel in Grab for the arrival quote, and allow 45–90 minutes on the road. With daylight left, visit Magellan’s Cross beside the Santo Niño basilica. With a later arrival, go straight for lechon and leave the ferry for tomorrow.

  • Sunlight Air to Cebu
  • Downtown overnight
  • Cebu lechon

Base: Cebu City

10 Day 10 Morning ferry to Bohol and on to Alona

Take a morning OceanJet sailing from Cebu Pier 1 to Tagbilaran, about two hours across the strait. Tourist-class tickets are roughly ₱960 per person, with terminal and luggage charges separate. Buy at oceanjet.net and reach the pier an hour before sailing. The overnight in Cebu leaves time for breakfast and a short hotel-to-port ride instead of an airport connection. At Tagbilaran, a Southwest private car to Alona is about ₱1,000 for up to four passengers and 30–45 minutes. Spend the remaining afternoon along Alona’s shore, where restaurants, dive shops and boat desks sit close together. This is your first of four Panglao nights.

  • Cebu Pier 1 departure
  • Tagbilaran arrival
  • Alona shore walk

Base: Bohol (Panglao)

11 Day 11 Chocolate Hills, Corella and Loboc

Hire an eight-hour Ultra Mint countryside car, about ₱3,000 for up to four passengers, with entrances and lunch extra. Request a customised 07:00 pickup and Corella stop; the standard tour starts later and does not automatically include that sanctuary. Allow around two hours from Panglao to the Chocolate Hills and approximately ₱150 for the viewpoint. Return through Loboc, stopping for lunch, then reach Corella before 14:30. The Philippine Tarsier Foundation charges about ₱150 and opens 08:30–15:30. Walk quietly with flash off. A Loboc buffet cruise costs around ₱1,200 per person; include it only if the driver can still get you to Corella on time.

  • Chocolate Hills viewpoint
  • Corella’s tarsier forest
  • Lunch stop at Loboc

Base: Bohol (Panglao)

12 Day 12 Balicasag reef from Panglao

Book Ultra Mint’s private Balicasag outing, starting around 06:30 and returning around noon. The boat costs about ₱3,700 for one to three passengers, plus ₱500 per foreign visitor for the environmental fee, island entry and mask rental. For two foreign adults, that makes roughly ₱4,700 before meals. A local guide takes you through the snorkelling areas, where turtles may be feeding over the reef. Stay beside the guide and give the animals space without chasing them. Lunch is separate, so eat back on Panglao after the return.

  • Balicasag’s reef areas
  • Local snorkelling guide
  • Private boat shared by up to three

Base: Bohol (Panglao)

13 Day 13 A final day along Alona Beach

Keep today on foot around Alona, without a countryside car or another boat departure. Start with a walk along the white-sand shore, then choose a place with shade for the middle of the day. Restaurants and dive shops line this stretch, so lunch need not become a separate journey. Kinilaw, raw fish dressed with vinegar and calamansi, is one local option; grilled squid or fish suits anyone wanting a cooked meal. This day can also absorb an outing moved from earlier in the Bohol stay. If the original plans went ahead, use it for the beach itself instead of filling the gap with a long drive.

  • Alona’s white sand
  • A day without transfers
  • Panglao seafood

Base: Bohol (Panglao)

14 Day 14 Leave through Bohol–Panglao airport

A Southwest car from Alona to Bohol–Panglao airport costs about ₱600 for up to four passengers; allow 15–20 minutes for the ride. Reach the airport three hours before a Cebu Pacific domestic flight. With PAL, use three hours as our planning buffer and follow your ticket’s instructions. Direct Manila flights take roughly 1.5 hours, with one-way fares around ₱2,500–4,500 depending on the date and ticket. Book with Philippine Airlines or Cebu Pacific, using Bohol–Panglao as the departure airport. Baggage follows the selected fare: some bundles include a checked bag, while others charge separately. You leave from Panglao itself, without returning to Tagbilaran’s ferry port. The fourteen-day itinerary ends with this flight.

  • Short Panglao airport transfer
  • Direct Manila flight
  • End of the fourteen-day route

Base: Bohol (Panglao)

Four transfers between the overnight bases

The two flights land you in a new base; the two ferries each have their own travel day.

4 transfers

  1. Manila (Makati) El Nido

    Flight Travel time: 2–3 hours by road + about 1.5 hours flying

    Arrive Pampanga collects at Makati hotels for a roughly ₱6,500 van to Clark. From there, fly Cebgo to Lio for around ₱4,500–9,000 per person, then take the ₱300 town tricycle.

  2. El Nido Coron

    Ferry Travel time: About 4 hours; ₱2,600 per person

    Atienza’s 12:30 boat reaches Coron around 16:30. Buy through atienzainterislandferriesinc.com and be at El Nido port by 10:30. A private tricycle into Coron town is roughly ₱300.

  3. Coron Cebu City

    Flight Travel time: 40–60 minutes to the airport + 1.5–2 hours flying

    Sunlight Air flies Busuanga–Cebu. Allow roughly ₱4,600 carry-on only or ₱5,400 with 10 kg checked baggage, plus a Coron airport van from ₱300. On Cebu, allow 45–90 minutes by car from Mactan to downtown.

  4. Cebu City Bohol (Panglao)

    Ferry Travel time: About 2 hours sailing + 30–45 minutes to Alona

    A morning OceanJet trip runs from Cebu Pier 1 to Tagbilaran, roughly ₱960 per person in tourist class. Southwest’s port-to-Alona car is about ₱1,000 for up to four passengers.

Know which prices are shared

Boat-tour seats and flights are charged per person. Sharing the Clark van, Bohol car and Balicasag boat makes a larger difference than trimming a small entrance fee.

Two domestic flights Clark–El Nido plus Busuanga–Cebu. Sunlight examples include taxes: carry-on only or 10 kg checked baggage. Clark baggage follows the fare; the Bohol exit flight is extra.
About ₱9,100–14,400 per person
Two ferries ₱2,600 El Nido–Coron plus approximately ₱960 Cebu–Tagbilaran. Allow extra for port or luggage charges. These are passenger fares, not private boat-charter prices.
About ₱3,560 per person
Four Palawan tours Seats cost ₱1,500 + ₱1,700 in El Nido and ₱2,200 + ₱2,000 in Coron. All four include lunch; El Nido tours also include a mask and snorkel.
About ₱7,400 per person, before extra fees
Environmental and lagoon fees El Nido ETDF ₱400, Big Lagoon ₱200, Coron ETDF ₱200. Reuse each environmental receipt for its town’s second tour. Matinloc Shrine and Coron snorkel hire are extra.
₱800 per person + a shared ₱350 kayak
Bohol outings for two For two foreign visitors: ₱3,000 car + ₱600 hill and sanctuary entries + ₱4,700 Balicasag boat and fees. Optional Loboc cruise adds about ₱2,400 for two.
About ₱8,300 total before lunches
Main private road transfers Clark hotel pickup ₱6,500, Tagbilaran port–Alona ₱1,000 and Alona–airport ₱600. The Clark price is for a van; the two Bohol prices are for a car carrying up to four.
About ₱8,100 per vehicle

Booking tips

  • Fix the Clark flight, Coron ferry and Busuanga flight dates first, then place the hotel nights around them.
  • Carry cash in smaller notes for tricycles and visitor fees; keep the environmental receipts until leaving each Palawan town.
  • Before comparing room prices, include the cost of reaching tour pickups: beachfront resorts outside town can add separate rides or boats.

El Nido stays for the Palawan boat days

Compare El Nido town, Corong-Corong and Caalan for the first Palawan base.

Compare El Nido rooms →
Loading El Nido accommodation

Two weeks across Palawan and the Visayas

Five overnight stops, with the flight into Cebu and ferry to Bohol on separate days.

Manila → El Nido → Coron → Cebu City → Bohol

Two-week route: what people ask

Can I start at Clark instead of Manila?

Yes. Replace the Makati night with a hotel near Clark and join the route at the El Nido flight. You remove the Metro Manila road transfer while keeping the same thirteen-night total.

Is this route suitable if I cannot swim?

Partly. Nacpan, Bohol’s countryside and Alona work without snorkelling, but several island stops involve water entries. Tell the operator if you need help boarding or prefer to remain ashore. A life jacket provides flotation; it does not make every swim or boat transfer suitable.

Which hotel area works for the Cebu night?

Downtown is the practical choice, near the heritage centre and a short ride from Pier 1. Mactan puts you closer to the airport on arrival but leaves a longer drive back across the bridges for the Bohol ferry.

Can I fly internationally from Cebu at the end?

Yes, with one extra night. Take the Tagbilaran–Cebu ferry after the Panglao stay, sleep near Mactan airport and fly the following day. That version takes fifteen days; the route shown here ends with a flight from Bohol on day 14.

What should I drop for a ten-day trip?

Drop Bohol and finish through Cebu after Coron. Preserve El Nido’s four nights and Coron’s three so both have full boat days. You can use the tenth day to fly onward from Cebu, instead of squeezing the Bohol ferry, countryside and reef into the same stay.

Flight, ferry and fee records

Editorial team StartBooker Editorial Travel guide editorial team

Checked on 2026-10-05

Updated

How this route was reviewed: Checked the route’s connections, tour inclusions and fee claims, then compared the day plans with the relevant city guides.

47 Source records

Airlines, boats and visitor information
  • Municipality of El Nido
  • Philippine Tarsier Foundation
  • Panglao Municipal Tourism Office
  • Government of the Philippines
  • OceanJet (Ocean Fast Ferries)
  • Cebu Pacific
References
Photo credits

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